If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ), 'gf_id' => 'HOM05D000877', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000877' ), 'data_identifier' => 'HOM05D000877', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000877', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '679', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02790' => 'bna', 'A03p06330' => 'bna', 'A03p06880' => 'bna', 'A06p41780' => 'bna', 'A09p10130' => 'bna', 'Aa31LG11G14550' => 'aar', 'Aa31LG11G15400' => 'aar', 'Aa31LG1G14650' => 'aar', 'Aa31LG2G5840' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1569' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4788' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.419' => 'aag', 'Actinidia02572' => 'ach', 'Actinidia06049' => 'ach', 'Actinidia08906' => 'ach', 'Actinidia22961' => 'ach', 'Actinidia22962' => 'ach', 'Actinidia22963' => 'ach', 'Actinidia35662' => 'ach', 'Actinidia36056' => 'ach', 'Actinidia36244' => 'ach', 'Ah.02g128890' => 'amhyb', 'Ah.03g148980' => 'amhyb', 'Ah.03g148990' => 'amhyb', 'Ah.03g149000' => 'amhyb', 'Ah.16g102250' => 'amhyb', 'AL2G40160' => 'aly', 'AL5G15570' => 'aly', 'AL6G24640' => 'aly', 'AL6G25740' => 'aly', 'AL8G45440' => 'aly', 'Aqoxy3G03133' => 'aox', 'Aqoxy4G01450' => 'aox', 'Aqoxy5G03145' => 'aox', 'Aqoxy5G03149' => 'aox', 'Aqoxy5G03150' => 'aox', 'Aqoxy6G02185' => 'aox', 'Aqoxy6G02273' => 'aox', 'arahy.Tifrunner.gnm1.ann1.57E4K5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG1XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68RGHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69HWTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AM52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE4V3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CX678H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI7JZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6PPQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3Y1NS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2KWL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBLH5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KN6KIA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L4IVZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9LC3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QX8KZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCA0E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSDZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ81P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFMJ6M' => 'arhy', 'AT3G26720' => 'ath', 'AT5G13980' => 'ath', 'AT5G14950' => 'ath', 'AT5G66150' => 'ath', 'ATR0090G042' => 'atr', 'ATR0582G243' => 'atr', 'ATR0712G018' => 'atr', 'ATR0712G127' => 'atr', 'Atru.chr3.827' => 'acertr', 'Atru.chr3.837' => 'acertr', 'Atru.chr3.838' => 'acertr', 'Atru.chr6.1909' => 'acertr', 'Atru.chr6.2158' => 'acertr', 'Atru.chr6.2159' => 'acertr', 'Atru.chr6.2691' => 'acertr', 'Atru.chr6.2692' => 'acertr', 'AUR62003352' => 'cqu', 'AUR62014574' => 'cqu', 'AUR62017420' => 'cqu', 'AUR62017421' => 'cqu', 'AUR62017422' => 'cqu', 'AUR62017423' => 'cqu', 'AUR62029484' => 'cqu', 'AUR62037829' => 'cqu', 'AUR62037830' => 'cqu', 'AUR62039387' => 'cqu', 'BcaB01g05016' => 'bca', 'BcaB01g05017' => 'bca', 'BcaB01g05019' => 'bca', 'BcaB01g05088' => 'bca', 'BcaB01g05316' => 'bca', 'BcaB01g05323' => 'bca', 'BcaB04g20121' => 'bca', 'BcaC03g13442' => 'bca', 'BcaC04g23116' => 'bca', 'BcaC06g31046' => 'bca', 'BolC1t03902H' => 'bol', 'BolC2t06672H' => 'bol', 'BolC3t13232H' => 'bol', 'BolC3t13237H' => 'bol', 'BolC3t13286H' => 'bol', 'BolC3t18832H' => 'bol', 'BolC7t44095H' => 'bol', 'BolC9t54089H' => 'bol', 'BraA02t05252Z' => 'bra', 'BraA03t09963Z' => 'bra', 'BraA03t10011Z' => 'bra', 'BraA06t27098Z' => 'bra', 'BraA09t36657Z' => 'bra', 'C01p39520' => 'bna', 'C02p07410' => 'bna', 'C03p07300' => 'bna', 'C03p07880' => 'bna', 'C03p65800' => 'bna', 'C07p35750' => 'bna', 'C09p12000' => 'bna', 'CAN.G1052.3' => 'can', 'CAN.G1116.3' => 'can', 'CAN.G1274.21' => 'can', 'CAN.G206.66' => 'can', 'CAN.G423.45' => 'can', 'CANSAT11G0020' => 'cansat', 'CANSAT25G3004' => 'cansat', 'CANSAT56G2209' => 'cansat', 'CANSAT64G0998' => 'cansat', 'CANSAT64G2271' => 'cansat', 'CARHR104420' => 'chi', 'CARHR147740' => 'chi', 'CARHR198360' => 'chi', 'CARHR199390' => 'chi', 'CARHR281590' => 'chi', 'Carub.0005s0472' => 'cru', 'Carub.0006s1217' => 'cru', 'Carub.0006s1311' => 'cru', 'Carub.0008s2835' => 'cru', 'Ca_04234_v3' => 'car', 'Ca_08139_v3' => 'car', 'Ca_08140_v3' => 'car', 'Ca_08141_v3' => 'car', 'Ca_10880_v3' => 'car', 'Ca_22390_v3' => 'car', 'CBR_g22451' => 'cbr', 'CBR_g22453' => 'cbr', 'CBR_g23169' => 'cbr', 'CBR_g23357' => 'cbr', 'CBR_g55161' => 'cbr', 'Cc04_g05900' => 'ccan', 'Cc07_g01260' => 'ccan', 'Cc07_g01270' => 'ccan', 'Cc07_g02730' => 'ccan', 'Cc07_g10950' => 'ccan', 'Cc09_g07970' => 'ccan', 'CDE04G3424' => 'cde', 'CDE05G0431' => 'cde', 'CDE05G3413' => 'cde', 'CDE07G0682' => 'cde', 'CDE07G1089' => 'cde', 'Cfa006989' => 'cfa', 'Cfa007480' => 'cfa', 'Ciclev10014083m.g' => 'ccl', 'Ciclev10014123m.g' => 'ccl', 'Ciclev10017122m.g' => 'ccl', 'Ciclev10017635m.g' => 'ccl', 'Ciclev10024800m.g' => 'ccl', 'Ciclev10030627m.g' => 'ccl', 'CiPaw.03G001700' => 'cil', 'CiPaw.03G002100' => 'cil', 'CiPaw.03G033300' => 'cil', 'CiPaw.07G060300' => 'cil', 'CiPaw.08G129500' => 'cil', 'ClCG01G007830' => 'cla', 'ClCG01G020400' => 'cla', 'ClCG10G014620' => 'cla', 'COL.COLO4_13370' => 'col', 'COL.COLO4_13372' => 'col', 'COL.COLO4_13373' => 'col', 'COL.COLO4_22449' => 'col', 'COL.COLO4_27503' => 'col', 'COL.COLO4_27505' => 'col', 'COL.COLO4_29856' => 'col', 'COL.COLO4_37248' => 'col', 'Cpa.g.c36966' => 'cpa', 'Cpa.g.c42234' => 'cpa', 'Cpa.g.c42598' => 'cpa', 'Cpa.g.sc13.163' => 'cpa', 'Cpa.g.sc2646.1' => 'cpa', 'Cpa.g.sc3592.1' => 'cpa', 'Cpa.g.sc6.275' => 'cpa', 'Cpa.g.sc70.69' => 'cpa', 'Cpa.g.sc70.70' => 'cpa', 'Cpa.g.sc70.71' => 'cpa', 'CsaV3_3G041960' => 'csa', 'CsaV3_5G024900' => 'csa', 'CsaV3_6G047280' => 'csa', 'CSS0001426' => 'camsi', 'CSS0003341' => 'camsi', 'CSS0011117' => 'camsi', 'CSS0011412' => 'camsi', 'CSS0020704' => 'camsi', 'CSS0034720' => 'camsi', 'CSS0035439' => 'camsi', 'CSS0049267' => 'camsi', 'DCAR_002971' => 'dca', 'DCAR_011189' => 'dca', 'DCAR_016343' => 'dca', 'DCAR_023141' => 'dca', 'Dinv13727' => 'din', 'Dinv23218' => 'din', 'Dinv25619' => 'din', 'Dinv33647' => 'din', 'Dinv33648' => 'din', 'Dinv33678' => 'din', 'Dinv35009' => 'din', 'Duzib147G0134' => 'dzi', 'Duzib147G0180' => 'dzi', 'Duzib147G0787' => 'dzi', 'Duzib147G1671' => 'dzi', 'Duzib205G0018' => 'dzi', 'Duzib264G0998' => 'dzi', 'Duzib264G1178' => 'dzi', 'Duzib264G1250' => 'dzi', 'ECA232G0002' => 'eca', 'ECA232G4469' => 'eca', 'ECA238G2186' => 'eca', 'ECA246G0224' => 'eca', 'ECA246G3373' => 'eca', 'EL10Ac2g03302' => 'bvu', 'EL10Ac2g04636' => 'bvu', 'EL10Ac6g13400' => 'bvu', 'EL10Ac6g13402' => 'bvu', 'EL10Ac6g13974' => 'bvu', 'EL10Ac6g15491' => 'bvu', 'EL10Ac9g20897' => 'bvu', 'Eucgr.G01583' => 'egr', 'Eucgr.G01931' => 'egr', 'Eucgr.I01600' => 'egr', 'Eucgr.J02166' => 'egr', 'Eucgr.J02454' => 'egr', 'Eucgr.J02455' => 'egr', 'Eucgr.J02456' => 'egr', 'Eucgr.J02457' => 'egr', 'Eucgr.J02459' => 'egr', 'Eucgr.J02460' => 'egr', 'Eucgr.K02195' => 'egr', 'Eucgr.L01376' => 'egr', 'Eucgr.L01536' => 'egr', 'Eucgr.L01537' => 'egr', 'FAN02G1853' => 'fan', 'FAN02G4060' => 'fan', 'FAN04G1749' => 'fan', 'FAN04G2042' => 'fan', 'FAN05G1244' => 'fan', 'FAN05G2327' => 'fan', 'FAN08G2836' => 'fan', 'FAN09G0739' => 'fan', 'FAN09G1274' => 'fan', 'FAN13G0474' => 'fan', 'FAN13G2504' => 'fan', 'FAN14G3486' => 'fan', 'FAN14G5633' => 'fan', 'FAN15G2323' => 'fan', 'FAN18G0429' => 'fan', 'FAN18G2399' => 'fan', 'FAN18G2784' => 'fan', 'FAN19G0167' => 'fan', 'FAN19G1105' => 'fan', 'FAN23G1863' => 'fan', 'FAN25G1016' => 'fan', 'FAN26G0857' => 'fan', 'FAN26G1010' => 'fan', 'FAN28G0222' => 'fan', 'FAN28G0294' => 'fan', 'FAN28G1709' => 'fan', 'FAN28G1727' => 'fan', 'FAN28G2160' => 'fan', 'FAN28G2230' => 'fan', 'FvH4_1g11550' => 'fve', 'FvH4_1g11600' => 'fve', 'FvH4_5g09420' => 'fve', 'FvH4_5g09421' => 'fve', 'FvH4_6g49910' => 'fve', 'FvH4_6g54272' => 'fve', 'FvH4_6g54280' => 'fve', 'Glyma.01G165000' => 'gma', 'Glyma.02G046800' => 'gma', 'Glyma.04G200900' => 'gma', 'Glyma.06G164500' => 'gma', 'Glyma.13G068100' => 'gma', 'Glyma.16G048100' => 'gma', 'Glyma.16G126400' => 'gma', 'Glyma.19G015900' => 'gma', 'Glyma.19G103100' => 'gma', 'Glyma.19G103200' => 'gma', 'Gohir.A02G171700' => 'ghi', 'Gohir.A03G056250' => 'ghi', 'Gohir.A03G056300' => 'ghi', 'Gohir.A05G334500' => 'ghi', 'Gohir.A07G217200' => 'ghi', 'Gohir.A09G000600' => 'ghi', 'Gohir.A09G024200' => 'ghi', 'Gohir.D03G008400' => 'ghi', 'Gohir.D03G110200' => 'ghi', 'Gohir.D04G073400' => 'ghi', 'Gohir.D07G224200' => 'ghi', 'Gohir.D09G000500' => 'ghi', 'Gohir.D09G023400' => 'ghi', 'Gohir.D09G068300' => 'ghi', 'Gorai.001G258600' => 'gra', 'Gorai.003G008600' => 'gra', 'Gorai.003G116600' => 'gra', 'Gorai.006G000300' => 'gra', 'Gorai.006G027500' => 'gra', 'Gorai.011G156900' => 'gra', 'Gorai.012G082700' => 'gra', 'GSVIVG01008340001' => 'vvi', 'GSVIVG01008642001' => 'vvi', 'GSVIVG01018751001' => 'vvi', 'GSVIVG01018752001' => 'vvi', 'GSVIVG01032586001' => 'vvi', 'GSVIVG01032988001' => 'vvi', 'GSVIVG01032989001' => 'vvi', 'HanXRQChr01g0021991' => 'han', 'HanXRQChr03g0087051' => 'han', 'HanXRQChr09g0256531' => 'han', 'HanXRQChr09g0273861' => 'han', 'HanXRQChr14g0448861' => 'han', 'HanXRQChr15g0473261' => 'han', 'HanXRQChr15g0483951' => 'han', 'HanXRQChr16g0498901' => 'han', 'HanXRQChr16g0498911' => 'han', 'HanXRQChr16g0498921' => 'han', 'HanXRQChr16g0498931' => 'han', 'HanXRQChr16g0531341' => 'han', 'Haze_03741' => 'cav', 'Haze_07103' => 'cav', 'Haze_11670' => 'cav', 'Haze_14617' => 'cav', 'Haze_14948' => 'cav', 'Haze_26713' => 'cav', 'Hma1.2p1_0135F.1_g061670' => 'hma', 'Hma1.2p1_0168F.1_g073990' => 'hma', 'Hma1.2p1_0577F.1_g182350' => 'hma', 'Hma1.2p1_0577F.1_g182360' => 'hma', 'Hma1.2p1_0577F.1_g182365' => 'hma', 'Hma1.2p1_0697F.1_g205150' => 'hma', 'Hma1.2p1_0849F.1_g228092' => 'hma', 'Hma1.2p1_0849F.1_g228094' => 'hma', 'Hma1.2p1_0869F.1_g230800' => 'hma', 'Hma1.2p1_0869F.1_g230810' => 'hma', 'Hma1.2p1_1306F.1_g274680' => 'hma', 'Hma1.2p1_1306F.1_g274690' => 'hma', 'HPP92_010829' => 'vpl', 'HPP92_011480' => 'vpl', 'HPP92_011543' => 'vpl', 'HPP92_015007' => 'vpl', 'HPP92_020718' => 'vpl', 'HPP92_020720' => 'vpl', 'HPP92_021620' => 'vpl', 'HPP92_021621' => 'vpl', 'Hund04192' => 'sun', 'Hund04195' => 'sun', 'Hund12222' => 'sun', 'Hund13754' => 'sun', 'Hund14055' => 'sun', 'Hund16097' => 'sun', 'Lalb_Chr02g0159851' => 'lal', 'Lalb_Chr05g0229791' => 'lal', 'Lalb_Chr06g0176531' => 'lal', 'Lalb_Chr09g0321641' => 'lal', 'Lalb_Chr09g0321651' => 'lal', 'Lalb_Chr11g0069221' => 'lal', 'Lalb_Chr24g0403161' => 'lal', 'Lalb_Chr24g0403181' => 'lal', 'Lj1g0001560' => 'lja', 'Lj1g0014327' => 'lja', 'Lj1g0022299' => 'lja', 'Lj2A479T47' => 'lonja', 'Lj2g0013078' => 'lja', 'Lj4g0002138' => 'lja', 'Lj5C87T12' => 'lonja', 'Lj7A407G44' => 'lonja', 'Lj7A616T65' => 'lonja', 'Lj9A486T55' => 'lonja', 'Lj9C486G14' => 'lonja', 'Lj9C572T7' => 'lonja', 'Lsat_1_v5_gn_1_60300' => 'lsa', 'Lsat_1_v5_gn_1_76580' => 'lsa', 'Lsat_1_v5_gn_2_76500' => 'lsa', 'Lsat_1_v5_gn_2_90780' => 'lsa', 'Lsat_1_v5_gn_3_72480' => 'lsa', 'Lsat_1_v5_gn_4_157381' => 'lsa', 'Lsat_1_v5_gn_4_180181' => 'lsa', 'Lsat_1_v5_gn_4_186200' => 'lsa', 'Lsat_1_v5_gn_4_84580' => 'lsa', 'Lsat_1_v5_gn_7_106240' => 'lsa', 'Lsat_1_v5_gn_7_107260' => 'lsa', 'Lsat_1_v5_gn_7_93661' => 'lsa', 'Lsat_1_v5_gn_8_72380' => 'lsa', 'Manes.02G137601' => 'mes', 'Manes.02G137701' => 'mes', 'Manes.04G093000' => 'mes', 'Manes.06G126300' => 'mes', 'Manes.11G076900' => 'mes', 'Manes.15G179800' => 'mes', 'Mapoly0060s0008' => 'mpo', 'Mapoly0060s0055' => 'mpo', 'Mapoly0070s0086' => 'mpo', 'MBI04_g08418_MAGBIO' => 'mbi', 'MBI05_g38845_MAGBIO' => 'mbi', 'MBI07_g41897_MAGBIO' => 'mbi', 'MBI10_g09176_MAGBIO' => 'mbi', 'MBI12_g04063_MAGBIO' => 'mbi', 'MBI12_g13263_MAGBIO' => 'mbi', 'MBI12_g13267_MAGBIO' => 'mbi', 'MBI12_g21356_MAGBIO' => 'mbi', 'MBI14_g18700_MAGBIO' => 'mbi', 'MBI15_g13304_MAGBIO' => 'mbi', 'MBI15_g16477_MAGBIO' => 'mbi', 'MBI15_g37632_MAGBIO' => 'mbi', 'MBI15_g40754_MAGBIO' => 'mbi', 'MBI16_g13188_MAGBIO' => 'mbi', 'MBI16_g16364_MAGBIO' => 'mbi', 'MBI16_g31390_MAGBIO' => 'mbi', 'MBI18_g15800_MAGBIO' => 'mbi', 'MBI18_g46215_MAGBIO' => 'mbi', 'MCO03G120' => 'mco', 'MCO03G577' => 'mco', 'MD02G1128700' => 'mdo', 'MD02G1129000' => 'mdo', 'MD06G1131600' => 'mdo', 'MD09G1002800' => 'mdo', 'MD09G1002900' => 'mdo', 'MD09G1040900' => 'mdo', 'MD17G1007000' => 'mdo', 'MD17G1042200' => 'mdo', 'Medtr3g013720' => 'mtr', 'Medtr3g098650' => 'mtr', 'Medtr4g071680' => 'mtr', 'Medtr6g008850' => 'mtr', 'Medtr7g084030' => 'mtr', 'Medtr7g084040' => 'mtr', 'Medtr8g075330' => 'mtr', 'MELO3C005109.2' => 'cme', 'MELO3C007919.2' => 'cme', 'MELO3C009914.2' => 'cme', 'MELO3C033167.2' => 'cme', 'Migut.D01188' => 'egut', 'Migut.F00013' => 'egut', 'Migut.H00173' => 'egut', 'Migut.H02173' => 'egut', 'MSTRG.23401' => 'ama', 'MSTRG.23976' => 'ama', 'MSTRG.3199' => 'ama', 'MSTRG.4641' => 'ama', 'Nitab4.5_0000864g0230' => 'nta', 'Nitab4.5_0001658g0030' => 'nta', 'Nitab4.5_0001841g0100' => 'nta', 'Nitab4.5_0001892g0020' => 'nta', 'Nitab4.5_0007185g0040' => 'nta', 'Nitab4.5_0009949g0010' => 'nta', 'Nn1g00845' => 'nnu', 'Nn4g22139' => 'nnu', 'Nn4g22140' => 'nnu', 'Nn4g22930' => 'nnu', 'Nn5g30749' => 'nnu', 'Oeu003413.3' => 'oeu', 'Oeu012845.1' => 'oeu', 'Oeu014567.1' => 'oeu', 'Oeu019476.1' => 'oeu', 'Oeu019480.1' => 'oeu', 'Oeu019487.1' => 'oeu', 'Oeu045578.1' => 'oeu', 'Oeu045582.1' => 'oeu', 'Oeu050233.1' => 'oeu', 'Os06g0245700' => 'osa', 'Os10g0140200' => 'osa', 'Os11g0525600' => 'osa', 'Peaxi162Scf00129g00742' => 'pax', 'Peaxi162Scf00207g00148' => 'pax', 'Peaxi162Scf00328g00724' => 'pax', 'PGR031G1339' => 'pgr', 'PGR042G0906' => 'pgr', 'PGR083G2584' => 'pgr', 'PGR102G1738' => 'pgr', 'PGR142G3623' => 'pgr', 'PGSC0003DMG400001394' => 'stu', 'PGSC0003DMG400003576' => 'stu', 'Phvul.001G084501' => 'pvu', 'Phvul.001G084700' => 'pvu', 'Phvul.002G107300' => 'pvu', 'Phvul.003G264400' => 'pvu', 'Phvul.004G022500' => 'pvu', 'Phvul.009G161600' => 'pvu', 'Potri.001G350400' => 'ptr', 'Potri.002G238200' => 'ptr', 'Potri.007G056300' => 'ptr', 'Potri.008G117400' => 'ptr', 'Potri.012G106401' => 'ptr', 'Potri.012G106500' => 'ptr', 'Potri.014G143600' => 'ptr', 'Potri.017G073900' => 'ptr', 'Pp3c23_10010' => 'ppa', 'Pp3c25_15030' => 'ppa', 'Pp3c6_2440' => 'ppa', 'PRCOL_00000439' => 'pco', 'PRCOL_00002105' => 'pco', 'PRCOL_00002106' => 'pco', 'Prupe.3G276800' => 'ppe', 'Prupe.3G313300' => 'ppe', 'Prupe.3G313400' => 'ppe', 'Prupe.5G142600' => 'ppe', 'Prupe.7G170500' => 'ppe', 'Psat0s2563g0040' => 'psa', 'Psat1g078760' => 'psa', 'Psat1g127520' => 'psa', 'Psat1g132000' => 'psa', 'Psat3g093400' => 'psa', 'Psat3g093440' => 'psa', 'Psat4g101360' => 'psa', 'Psat5g054680' => 'psa', 'PSO017G0098' => 'pso', 'PSO017G2254' => 'pso', 'PSO063G0243' => 'pso', 'PSO135G0228' => 'pso', 'PSO161G0067' => 'pso', 'PSO478G1913' => 'pso', 'PSO478G2265' => 'pso', 'PSO478G3344' => 'pso', 'PSO478G4497' => 'pso', 'PSO724G0078' => 'pso', 'QL02p069549' => 'qlo', 'QL02p069603' => 'qlo', 'QL02p069673' => 'qlo', 'QL02p069765' => 'qlo', 'QL02p078595' => 'qlo', 'QL06p050906' => 'qlo', 'QL06p050917' => 'qlo', 'QL06p050936' => 'qlo', 'QL10p000588' => 'qlo', 'QL10p000606' => 'qlo', 'QL10p000629' => 'qlo', 'QL11p048256' => 'qlo', 'RcHm_v2.0_Chr2g0099191' => 'rch', 'RcHm_v2.0_Chr2g0099201' => 'rch', 'RcHm_v2.0_Chr2g0170081' => 'rch', 'RcHm_v2.0_Chr2g0176471' => 'rch', 'RcHm_v2.0_Chr2g0176481' => 'rch', 'RcHm_v2.0_Chr2g0176491' => 'rch', 'RcHm_v2.0_Chr7g0188771' => 'rch', 'RcHm_v2.0_Chr7g0188781' => 'rch', 'RcHm_v2.0_Chr7g0188851' => 'rch', 'RcHm_v2.0_Chr7g0188871' => 'rch', 'RcHm_v2.0_Chr7g0188881' => 'rch', 'Rhsim10G0001300' => 'rsi', 'Rhsim10G0210800' => 'rsi', 'Rhsim12G0180700' => 'rsi', 'RhsimUnG0168300' => 'rsi', 'Sabra07G0048500' => 'sbr', 'Sabra12G0078700' => 'sbr', 'Sabra14G0108600' => 'sbr', 'Sabra16G0229900' => 'sbr', 'SalBow1G4164' => 'sbo', 'SalBow2G3610' => 'sbo', 'SalBow3G3565' => 'sbo', 'SalBow4G2395' => 'sbo', 'SalBow4G3084' => 'sbo', 'Sc03g0003660' => 'sci', 'Sc07g0003770' => 'sci', 'Sc07g0003780' => 'sci', 'Sc11g0007990' => 'sci', 'ScUNg0000380' => 'sci', 'Sed0005677' => 'sed', 'Sed0017980' => 'sed', 'Sed0023893' => 'sed', 'SEGI_00883' => 'sgi', 'SEGI_02001' => 'sgi', 'SEGI_02296' => 'sgi', 'SEGI_04635' => 'sgi', 'SEGI_05280' => 'sgi', 'SEGI_08136' => 'sgi', 'SEGI_08738' => 'sgi', 'SEGI_09166' => 'sgi', 'SEGI_09690' => 'sgi', 'SEGI_10281' => 'sgi', 'SEGI_10522' => 'sgi', 'SEGI_13832' => 'sgi', 'SEGI_14106' => 'sgi', 'SEGI_14647' => 'sgi', 'SEGI_15229' => 'sgi', 'SEGI_19450' => 'sgi', 'SEGI_24038' => 'sgi', 'SEGI_24949' => 'sgi', 'SEGI_25346' => 'sgi', 'SEGI_27946' => 'sgi', 'SEGI_28313' => 'sgi', 'SEGI_32078' => 'sgi', 'SEGI_32161' => 'sgi', 'SEGI_34449' => 'sgi', 'SEGI_37737' => 'sgi', 'SEGI_40241' => 'sgi', 'SEGI_40971' => 'sgi', 'SGA_v2.0_scaffold135G34823' => 'sas', 'SGA_v2.0_scaffold168G38544' => 'sas', 'SGA_v2.0_scaffold40G15676' => 'sas', 'SGA_v2.0_scaffold44G16954' => 'sas', 'SHI06805' => 'shi', 'SHI11390' => 'shi', 'SHI11391' => 'shi', 'SHI11393' => 'shi', 'SMO118G0004' => 'smo', 'SMO174G0078' => 'smo', 'SMO196G0126' => 'smo', 'SMO198G0016' => 'smo', 'SMO356G0676' => 'smo', 'Solyc02g083700.4' => 'sly', 'Solyc02g087290.3' => 'sly', 'Solyc06g068860.3' => 'sly', 'Sopen02g028470' => 'spe', 'Sopen02g032050' => 'spe', 'Sopen06g026150' => 'spe', 'Sp2g15840' => 'spa', 'Sp2g30540' => 'spa', 'Sp6g29100' => 'spa', 'Sp6g30020' => 'spa', 'TAR371G0158' => 'tar', 'TAR371G0342' => 'tar', 'TAR371G0547' => 'tar', 'TAR371G0744' => 'tar', 'TAR475G0002' => 'tar', 'TAR628G0896' => 'tar', 'TAR629G0182' => 'tar', 'TAR629G1000' => 'tar', 'TAR629G3138' => 'tar', 'TAR629G3200' => 'tar', 'THA.LOC104805301' => 'tha', 'THA.LOC104821137' => 'tha', 'THA.LOC104821170' => 'tha', 'Thecc.01G015900' => 'tca', 'Thecc.03G139700' => 'tca', 'Thecc.04G047600' => 'tca', 'Thecc.04G047700' => 'tca', 'Thecc.04G066700' => 'tca', 'Thhalv10003575m.g' => 'esa', 'Thhalv10003577m.g' => 'esa', 'Thhalv10012487m.g' => 'esa', 'Thhalv10012546m.g' => 'esa', 'TPR.G10340' => 'tpr', 'TPR.G11437' => 'tpr', 'TPR.G19501' => 'tpr', 'TPR.G19507' => 'tpr', 'TPR.G21578' => 'tpr', 'TPR.G32573' => 'tpr', 'TPR.G35987' => 'tpr', 'TWI32G0343' => 'twi', 'TWI32G0377' => 'twi', 'TWI34G0566' => 'twi', 'TWI53G0451' => 'twi', 'TWI56G0224' => 'twi', 'TWI73G0727' => 'twi', 'unitig_37.g12627' => 'ugi', 'unitig_699.g19885' => 'ugi', 'vmacro05784' => 'vma', 'vmacro16753' => 'vma', 'vmacro22143' => 'vma', 'vmacro22245' => 'vma', 'vmacro22246' => 'vma', 'vmacro22247' => 'vma', 'VMungo0251G0882' => 'vmu', 'VMungo0251G1714' => 'vmu', 'VMungo0464G1235' => 'vmu', 'VMungo1215G1201' => 'vmu', 'VMungo1309G3129' => 'vmu', 'VMungo1383G0452' => 'vmu', 'VMungo1383G2432' => 'vmu', 'Zm00001eb026240' => 'zma', 'Zm00001eb026300' => 'zma', 'Zm00001eb026330' => 'zma', 'Zm00001eb113240' => 'zma', 'Zm00001eb265990' => 'zma', 'Zm00001eb280070' => 'zma', 'Zm00001eb371770' => 'zma' ) $gf_id = 'HOM05D000877' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000877' ) $data_identifier = 'HOM05D000877' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 10, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 14, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 12, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 5, 'lonja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 18, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 3, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 12, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 27, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 3, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb371770' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1